Insertion junction: CLIP2.055856_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.055856
Chromosome:chromosome 5
Location:568435
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g244701 (1 of 1) IPR028974 - TSP type-3 repeat intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AACGCATGCACACTGGTGCGGCATGTAGCTGAAGCGCTCCTGCGGCTGCA
Internal bar code:AGTCGAGGCATTGGTTAGACGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1146
LEAP-Seq percent confirming:33.3333
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:9

Suggested primers for confirmation by PCR

Suggested primer 1:GATGGCCGCACATCATTGTC
Suggested primer 2:GCCGATGGGTTACTAGGAGC