Insertion junction: CLIP2.056257_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.056257
Chromosome:chromosome 9
Location:1103378
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g401700 (1 of 1) PTHR16193:SF0 - TETRATRICOPEPTIDE REPEAT PROTEIN 27 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCACCATTGACCATCCCGGTCCAAGTGGGCCAGTTGCAATAGTAAACACC
Internal bar code:AAACTGGTGTAGAATGCGATTT

Confirmation - LEAP-Seq

LEAP-Seq distance:1563
LEAP-Seq percent confirming:94.4444
LEAP-Seq n confirming:34
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:36

Suggested primers for confirmation by PCR

Suggested primer 1:TCATCTGTAAACGCGGCACT
Suggested primer 2:GGACCATACACGCGTACGAT