Insertion junction: CLIP2.056535_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.056535
Chromosome:plastome
Location:172489
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802328 psbJ,2716960,ChreCp063 (1 of 1) K02711 - photosystem II PsbJ protein (psbJ); photosystem II reaction center protein J 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTTGCTCCGTTGAGTCTATAAATGTCTTGCCTCCTGTCCCCTTCTGATAA
Internal bar code:TCTGTGATGTAGTGTACTCGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:236
LEAP-Seq percent confirming:85.7143
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:7

Suggested primers for confirmation by PCR

Suggested primer 1:CAGCCTCACAGTTTGCCAAG
Suggested primer 2:CCCCTTCGGGCAACTAAAGT