Insertion junction: CLIP2.057137_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.057137
Chromosome:chromosome 12
Location:5408139
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g529350 SMM42 (1 of 1) 2.1.1.163//2.1.1.201 - Demethylmenaquinone methyltransferase / Demethylmenaquinone C-methylase // 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase; S-adenosyl-L-methionine-dependent methyltransferase 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGCTGTGACGTGCCATTCGGCATTTAGCCATCAGAGTTATATCTTTTGAC
Internal bar code:TCCGGGTAAACGATCTTCGCAG

Confirmation - LEAP-Seq

LEAP-Seq distance:1297
LEAP-Seq percent confirming:94.9153
LEAP-Seq n confirming:56
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:59

Suggested primers for confirmation by PCR

Suggested primer 1:CCCACCGATATCTCCAGCAC
Suggested primer 2:GGTTCGTTCCAGCACTCTGA