Insertion junction: CLIP2.057334_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.057334
Chromosome:chromosome 6
Location:2602341
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g269950 CDC48,EZY21,NSG14 (1 of 1) K13525 - transitional endoplasmic reticulum ATPase (VCP, CDC48); Cell Division Cycle protein 48 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCTTCATTCTGCTGTAGTCGTTAAAGCCACACGGTAACTTGTCTATACCA
Internal bar code:GTGCTGTAAGTGCCCCCTGACT

Confirmation - LEAP-Seq

LEAP-Seq distance:680
LEAP-Seq percent confirming:60.0
LEAP-Seq n confirming:9
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:15

Suggested primers for confirmation by PCR

Suggested primer 1:TAATCCACCTGGCAGCACTG
Suggested primer 2:GACTTTGCCAACCTGCCTTG