Insertion junction: CLIP2.058878_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.058878
Chromosome:chromosome 10
Location:1167624
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g425750 (1 of 1) PTHR11227:SF18 - WD REPEAT DOMAIN PHOSPHOINOSITIDE-INTERACTING PROTEIN 3 5'UTR
lncRNA_TCONS_00063058 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCCTATTGCGTTACCTGCCGTTTCAGGCCGAGACCAAGCCAAACTGTCGG
Internal bar code:TTCCCTCGAGGGGTGACTTTGT

Confirmation - LEAP-Seq

LEAP-Seq distance:296
LEAP-Seq percent confirming:83.3333
LEAP-Seq n confirming:15
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:18

Suggested primers for confirmation by PCR

Suggested primer 1:GGCCTGACATGGTGAAGTGA
Suggested primer 2:CCCAATGCACTTCCCCTGAT