Insertion junction: CLIP2.060682_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.060682
Chromosome:chromosome 9
Location:2977436
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g393358 VIG1 Vasa-intronic gene homolog; (1 of 1) K13199 - plasminogen activator inhibitor 1 RNA-binding protein (SERBP1) 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTTCCTTCCTCCCCTATTCAGTGTTGCATCAGCTAGCGGCAGACGCGAGG
Internal bar code:TCCCCTTCCCATTAATCATATA

Confirmation - LEAP-Seq

LEAP-Seq distance:1673
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:26
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:26

Suggested primers for confirmation by PCR

Suggested primer 1:CGGGTATAGATGCGCAAGGT
Suggested primer 2:CCAGCTCCATTTACGCATGC