Gene: Cre09.g393358
Overview
| Common name: | VIG1 |
| Defline: | Vasa-intronic gene homolog; (1 of 1) K13199 - plasminogen activator inhibitor 1 RNA-binding protein (SERBP1) |
| Description: | Ortholog of Drosophila VIG gene, required for translational inhibition by RNA-induced silencing complexes formed by sRNA and Argonaute but dispensable for cleavage-mediated RNA interference; localizes to mono- and polyribosomes in the cytosol; copurifies with AGO3 and DCL3; mutant is hypersentitive to cycloheximide |
| Synonyms: | Cre02.g129300.t1.1,g9752.t1,Cre02.g129300.t1.2 |
| Chromosome: | chromosome 9 |
Protein Localization
A plasmid for expressing Cre09.g393358 tagged with the fluorescent protein Venus and affinity epitope 3xFLAG is available: pLM005-Cre09.g393358-Venus-3xFLAG
Imaged strain: CSI_LW11C8
Imaging conditions: Tris-Phosphate media, air, 150 uM photons/m2/s, shaking in 96-well plate; imaged after 16 hours.
Classification(s):
cytosol/cytosol (strong signal)
If you reference these protein localization data in a manuscript, please cite: Wang et al. 2023.
 |  |  |  |
| Venus | Chlorophyll | Bright field | Merged |
Protein-Protein Interactions
We did not determine any protein-protein interactions for this gene.
Mutant Strains
| Insertion Junction | Mutant Strain | Insertion Junction Feature | Confidence (%) | Genome Version |
|---|---|---|---|---|
| CLIP2.012818_1 | CLIP2.012818 | intron | 80 | 6.1 |
| CLIP2.057130_1 | CLIP2.057130 | 3'UTR | 80 | 6.1 |
| CLIP2.057130_2 | CLIP2.057130 | 3'UTR | 80 | 6.1 |
| CLIP2.060682_1 | CLIP2.060682 | 5'UTR | 80 | 6.1 |
| CLIP2.060682_2 | CLIP2.060682 | 5'UTR | 80 | 6.1 |
| CLIP2.069483_3 | CLIP2.069483 | 3'UTR | 80 | 6.1 |
| CLIP2.069483_4 | CLIP2.069483 | 3'UTR | 80 | 6.1 |
| CLIP2.073820_1 | CLIP2.073820 | 3'UTR | 80 | 6.1 |
| CLIP2.073820_2 | CLIP2.073820 | 3'UTR | 80 | 6.1 |
| CLIP2.079226_1 | CLIP2.079226 | 3'UTR | 80 | 6.1 |
| LMJ.RY0402.070600_1 | LMJ.RY0402.070600 | 3'UTR | 95 | 5.5 |
| LMJ.RY0402.070600_2 | LMJ.RY0402.070600 | 3'UTR | 95 | 5.5 |
Gene Annotations
| PFAM: | PF04774, PF09598 |
| PANTHER: | PTHR12299 |
| KEGG_ec: | EC:3.6.4.13 |
| KEGG_orthology: | K13199 |
| KOG: | KOG2945 |
| Gene ontology terms:: | |
| Best arabidopsis TAIR name: | AT4G16830 |
| Best arabidopsis TAIR symbol: | |
| Best arabidopsis TAIR defline: | Hyaluronan / mRNA binding family |
| Phytozome Locus Page |
Phenotypes
Our phenotype screens did not find statistically significant results for this gene.