Insertion junction: CLIP2.062263_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.062263
Chromosome:chromosome 5
Location:2520095
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g239250 (1 of 1) IPR003613//IPR003888//IPR003889//IPR013083 - U box domain // FY-rich, N-terminal // FY-rich, C-terminal // Zinc finger, RING/FYVE/PHD-type 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTATTTATGAGTGGAAGCGCCCTGCCGTACCGTAGCTAGAATCGTTTGTC
Internal bar code:GCCTACAGCGATCTCGATGTAG

Confirmation - LEAP-Seq

LEAP-Seq distance:1693
LEAP-Seq percent confirming:92.5926
LEAP-Seq n confirming:25
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:27

Suggested primers for confirmation by PCR

Suggested primer 1:CCAAAAGTGACCGCAACCTG
Suggested primer 2:CTTCCTGGACCCCATCACAC