Insertion junction: CLIP2.062611_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.062611
Chromosome:chromosome 10
Location:5343076
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g456851 TMG4 tRNA (guanine-N1)-methyltransferase; (1 of 3) 2.1.1.221 - tRNA (guanine(9)-N(1))-methyltransferase / tRNA m(1)G(9)-methyltransferase 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGCCTGGAACAGGCGACAAAAGGATCGGTGTAAGGTGGCTATCACTGAAC
Internal bar code:TAGTGGCGCTTTGTCGTCTCAC

Confirmation - LEAP-Seq

LEAP-Seq distance:1497
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:33
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:33

Suggested primers for confirmation by PCR

Suggested primer 1:CAATGTTACGTGGCTGCAGG
Suggested primer 2:ACTTCTATCTGGGATGCGCG