Insertion junction: CLIP2.064295_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.064295
Chromosome:chromosome 6
Location:3351392
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g277801 DNL4,DNL7 DNA ligase; (1 of 2) K10777 - DNA ligase 4 (LIG4, DNL4) 3'UTR
Cre06.g800655 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCTCTAACGGCGTGGCAGCGGGCGCCTAGGGCCCTCGCGGGCCCGCCCA
Internal bar code:ATTAGGACGGAATTGTACAATG

Confirmation - LEAP-Seq

LEAP-Seq distance:1944
LEAP-Seq percent confirming:65.3846
LEAP-Seq n confirming:17
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:26

Suggested primers for confirmation by PCR

Suggested primer 1:TGGGATGTTGTGTTAGCGCT
Suggested primer 2:AGAGAGAGCGGCCCTTAAGA