Insertion junction: CLIP2.065297_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.065297
Chromosome:chromosome 12
Location:1203739
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g490250 (1 of 1) PTHR12658//PTHR12658:SF0 - BETA-TUBULIN COFACTOR D // TUBULIN-SPECIFIC CHAPERONE D 3'UTR
Cre12.g490300 MSD4 (1 of 5) K04564 - superoxide dismutase, Fe-Mn family (SOD2); Mn superoxide dismutase CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGCGGCGGAGCCATAGTTGCCATGATATTACACACCAGCCAAGCCAATTA
Internal bar code:TCCCGAGCCGTGGCAGTGTTCG

Confirmation - LEAP-Seq

LEAP-Seq distance:830
LEAP-Seq percent confirming:84.0
LEAP-Seq n confirming:21
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:25

Suggested primers for confirmation by PCR

Suggested primer 1:TCGTCTCCTGGTCTCGGATT
Suggested primer 2:TAAGGACAAGTGGGCTGCTG