Insertion junction: CLIP2.065417_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.065417
Chromosome:chromosome 3
Location:6497847
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g193750 GCST,GCST1 Glycine cleavage system, T protein; (1 of 1) K00605 - aminomethyltransferase (gcvT, AMT) 3'UTR
Cre03.g193800 TSN1 Aspartyl-tRNA synthetase; (1 of 1) 6.1.1.22 - Asparagine--tRNA ligase / Asparaginyl-tRNA synthetase 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GACCTGAAACCGTGAAACGTGCTTGGTTCTGATTGCCGCCCTACCGCTGC
Internal bar code:CTGATAGTCGTATAGGACACTT

Confirmation - LEAP-Seq

LEAP-Seq distance:1140
LEAP-Seq percent confirming:96.5517
LEAP-Seq n confirming:28
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:29

Suggested primers for confirmation by PCR

Suggested primer 1:GCCGTAATACTCCATCGCCA
Suggested primer 2:GCCAGGACGGTTTTTGAACC