Insertion junction: CLIP2.066550_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.066550
Chromosome:chromosome 12
Location:6313646
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g536800 CGL52 (1 of 8) PF10184 - Uncharacterized conserved protein (DUF2358) (DUF2358); Conserved in the Green Lineage 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TACAGGTAAAGGAGTATGGAGAAGTCGGAGCAAGTTCGAGGATTCTGTTT
Internal bar code:GAGGCTCTTACAGACACGTTGT

Confirmation - LEAP-Seq

LEAP-Seq distance:427
LEAP-Seq percent confirming:66.6667
LEAP-Seq n confirming:26
LEAP-Seq n nonconfirming:13
LEAP-Seq n unique pos:39

Suggested primers for confirmation by PCR

Suggested primer 1:TTCATTCTGCTGCTCCTCCG
Suggested primer 2:GTTGCTTTCTCCCTAGGCGT