Insertion junction: CLIP2.068062_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.068062
Chromosome:chromosome 2
Location:827240
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g078750 PUS3 RNA pseudouridine synthase; (1 of 1) K15452 - tRNA pseudouridine synthase 2 [EC:5.4.99.-] (PUS2) outside_mRNA

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACCCGTTTGCCTTCCTGCTCGACTGTCATCGACCAAACTTTCACAGGGAC
Internal bar code:TAGCGGGTGGCGGAAGGGTTTA

Confirmation - LEAP-Seq

LEAP-Seq distance:4084
LEAP-Seq percent confirming:94.8276
LEAP-Seq n confirming:110
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:116

Suggested primers for confirmation by PCR

Suggested primer 1:AGGTCAAGGCCTGTTTGGAG
Suggested primer 2:AAATGCTTTGAAAGGCGCGT