Insertion junction: CLIP2.068647_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.068647
Chromosome:chromosome 9
Location:5925313
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g412000 (1 of 26) IPR013026//IPR019734 - Tetratricopeptide repeat-containing domain // Tetratricopeptide repeat 3'UTR
Cre09.g412050 (1 of 587) 2.7.11.1 - Non-specific serine/threonine protein kinase / Threonine-specific protein kinase 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTGAAAGCCACACGTCGACACGCCGGCCCCACCCATCTCCCCGCGGACCT
Internal bar code:GGTGGTCTAGTGGTGCAGTATA

Confirmation - LEAP-Seq

LEAP-Seq distance:1324
LEAP-Seq percent confirming:95.2381
LEAP-Seq n confirming:20
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:21

Suggested primers for confirmation by PCR

Suggested primer 1:CGTTAGGATTCGGGCTACCC
Suggested primer 2:CACAGACACACAGCTTTGGC