Insertion junction: CLIP2.068720_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.068720
Chromosome:chromosome 11
Location:4192169
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre11.g481500 HIS7 Imidazole glycerol phosphate synthase; (1 of 1) K01663 - glutamine amidotransferase / cyclase (HIS7) 5'UTR_intron
Cre11.g481550 (1 of 1) K03136 - transcription initiation factor TFIIE subunit alpha (TFIIE1, GTF2E1, TFA1, tfe) 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AAGGCAATTGGAAAGCTTGAAGGCGTAAACCAGCTGGCCCAGCGTGATCG
Internal bar code:GTAGGGCTGGCATAGATGAAAG

Confirmation - LEAP-Seq

LEAP-Seq distance:492
LEAP-Seq percent confirming:80.0
LEAP-Seq n confirming:8
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:10

Suggested primers for confirmation by PCR

Suggested primer 1:TCACATCGCGGATCGTGTAG
Suggested primer 2:CTCCCTTCCCTAGTCCCCTC