Insertion junction: CLIP2.069052_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.069052
Chromosome:chromosome 1
Location:7149494
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g051174 BLZ1 (1 of 6) PF07716 - Basic region leucine zipper (bZIP_2); bZIP transcription factor outside_mRNA
Cre01.g051211 MAE9 (1 of 11) K03327 - multidrug resistance protein, MATE family (TC.MATE, SLC47A, norM, mdtK, dinF); MATE efflux family protein 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TATAGTAGCTGCCTAGCTGGCGTCTGCAGATTCCCCACGCACATCACGTA
Internal bar code:TTATATGTTCCATCCTCGGTTA

Confirmation - LEAP-Seq

LEAP-Seq distance:5013
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:91
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:91

Suggested primers for confirmation by PCR

Suggested primer 1:CGCGTTTGAAGTCAGCACAA
Suggested primer 2:GTGGTGCCGTTTTGGTTCTC