Insertion junction: CLIP2.069821_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.069821
Chromosome:chromosome 4
Location:185962
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre04.g217000 intron
lncRNA_TCONS_00237454 intron
lncRNA_TCONS_00237455 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTTGCTCGGCTGGCAAACAGAGCACACAGCACGCCCACGCTCTATTGCAG
Internal bar code:GACCAGAGGCTTCCAGCGGAAG

Confirmation - LEAP-Seq

LEAP-Seq distance:871
LEAP-Seq percent confirming:25.0
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:4

Suggested primers for confirmation by PCR

Suggested primer 1:CACGGCAAAGGCACGTTTTA
Suggested primer 2:CACGCCACGAACAGCATATG