Insertion junction: CLIP2.069848_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.069848
Chromosome:chromosome 6
Location:1621078
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g261700 (1 of 1) K14815 - mRNA turnover protein 4 (MRT4) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATCACGGGCTCACGGTACCGACCAGTGCCCTTGCAGCGGAGGAGCCAATC
Internal bar code:GATTTGATCAGTCAGGCACCCC

Confirmation - LEAP-Seq

LEAP-Seq distance:279
LEAP-Seq percent confirming:44.4444
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:9

Suggested primers for confirmation by PCR

Suggested primer 1:TTCCCACCTCTCCTACTCCG
Suggested primer 2:TATATGCTTCGCGCTGACGT