Insertion junction: CLIP2.070776_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.070776
Chromosome:chromosome 16
Location:3300604
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g666334 RFS1 (1 of 1) 2.4.1.82 - Galactinol--sucrose galactosyltransferase / Raffinose synthase; putative raffinose synthase intron
Cre16.g666400 MAD1 (1 of 1) K06638 - mitotic spindle assembly checkpoint protein MAD1 (MAD1L); putative mitotic spindle assembly checkpoint protein outside_mRNA

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCAACCCTCCCAACCCTCCCTACCCTCGTCCCAACTCACTTGGCGGGTGC
Internal bar code:ATCGTTGTTAGATCCGTGGAAC

Confirmation - LEAP-Seq

LEAP-Seq distance:2497
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:12
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:12

Suggested primers for confirmation by PCR

Suggested primer 1:GCACAAAAACGCAGTGGCTA
Suggested primer 2:AGAGTGTGAGAAGGCCATGC