Insertion junction: CLIP2.071466_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.071466
Chromosome:plastome
Location:64728
Confidence (%):40
Locus systematic id Locus common name Defline Feature
CreCp.g802291 ChreCp027,psbZ,2716976 photosystem II reaction center Z protein; (1 of 1) K02724 - photosystem II PsbZ protein (psbZ) 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATTTATATACTGCAGCAAAATTTATTTGCTGCGCTAGCAGGTTTACATAC
Internal bar code:TGGGCGTGGACTGCGTTTTTAC

Confirmation - LEAP-Seq

LEAP-Seq distance:642
LEAP-Seq percent confirming:68.9655
LEAP-Seq n confirming:20
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:29

Suggested primers for confirmation by PCR

Suggested primer 1:ACGTTGCACCGTGTTTGTTC
Suggested primer 2:GGCACTTTAGTCTTGCGCAG