Insertion junction: CLIP2.071471_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.071471
Chromosome:chromosome 11
Location:2527202
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g095101 (1 of 1) PTHR24012:SF459 - RNA-BINDING PROTEIN 4F 3'UTR
Cre02.g095102 VPS5C (1 of 4) PTHR10555:SF84 - SORTING NEXIN-8; Subunit of Retromer complex 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATGCTGAGATGTGTTTGGCACTGCATGAACGCTGCTGTGTTGTTTGCGTG
Internal bar code:AATTTTGATAACGGTTACACAT

Confirmation - LEAP-Seq

LEAP-Seq distance:820
LEAP-Seq percent confirming:78.5714
LEAP-Seq n confirming:11
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:14

Suggested primers for confirmation by PCR

Suggested primer 1:GGTGAAAGTGAGCCAGTCGA
Suggested primer 2:CAGTGGTGGTAGTGGCAGAG