Gene: Cre02.g095102

Overview

Common name:	VPS5C
Defline:	(1 of 4) PTHR10555:SF84 - SORTING NEXIN-8; Subunit of Retromer complex
Description:	Expressed Protein. Similar to VPS5/SNX1, component of Retromer Coat complex involved in endosomal to Golgi trafficking.
Synonyms:	Cre11.g472500.t1.2,Cre11.g472500.t1.1,g1875.t1,VPS5C
Chromosome:	chromosome 11 (genome version v6.1), chromosome 2 (genome version v5.5)

Protein Localization

We did not create a plasmid for this gene.

Protein-Protein Interactions

We did not determine any protein-protein interactions for this gene.

Mutant Strains

Insertion Junction	Mutant Strain	Insertion Junction Feature	Confidence (%)	Genome Version
CLIP2.022206_1	CLIP2.022206	intron	80	6.1
CLIP2.032184_1	CLIP2.032184	intron	80	6.1
CLIP2.032184_2	CLIP2.032184	intron	80	6.1
CLIP2.071471_1	CLIP2.071471	3'UTR	80	6.1
CLIP2.071471_2	CLIP2.071471	3'UTR	80	6.1
CLIP2.074029_1	CLIP2.074029	3'UTR	80	6.1
CLIP2.074029_2	CLIP2.074029	3'UTR	80	6.1
CLIP2.075366_1	CLIP2.075366	3'UTR	63	6.1
LMJ.RY0402.051768_1	LMJ.RY0402.051768	intron	73	5.5
LMJ.RY0402.055939_1	LMJ.RY0402.055939	intron	95	5.5
LMJ.RY0402.055939_2	LMJ.RY0402.055939	intron	95	5.5
LMJ.RY0402.079252_1	LMJ.RY0402.079252	CDS	73	5.5
LMJ.RY0402.090960_1	LMJ.RY0402.090960	intron	95	5.5
LMJ.RY0402.090960_2	LMJ.RY0402.090960	intron	95	5.5
LMJ.RY0402.133051_1	LMJ.RY0402.133051	3'UTR	73	5.5
LMJ.RY0402.138320_1	LMJ.RY0402.138320	intron	95	5.5
LMJ.RY0402.138320_2	LMJ.RY0402.138320	intron	95	5.5
LMJ.RY0402.138786_1	LMJ.RY0402.138786	intron	73	5.5
LMJ.RY0402.143885_1	LMJ.RY0402.143885	3'UTR	73	5.5
LMJ.RY0402.150199_1	LMJ.RY0402.150199	intron	73	5.5
LMJ.RY0402.161308_1	LMJ.RY0402.161308	intron	73	5.5
LMJ.RY0402.185049_1	LMJ.RY0402.185049	intron	58	5.5
LMJ.RY0402.203840_1	LMJ.RY0402.203840	CDS	95	5.5
LMJ.RY0402.203840_2	LMJ.RY0402.203840	CDS	95	5.5
LMJ.RY0402.224080_1	LMJ.RY0402.224080	CDS	95	5.5
LMJ.RY0402.224080_2	LMJ.RY0402.224080	CDS	95	5.5
LMJ.RY0402.248116_1	LMJ.RY0402.248116	3'UTR	73	5.5

Gene Annotations

PFAM:	PF00787
PANTHER:	PTHR10555 PTHR10555:SF84
KEGG_ec:
KEGG_orthology:
KOG:	KOG2273
Gene ontology terms::	GO:0035091
Best arabidopsis TAIR name:	AT5G58440.1
Best arabidopsis TAIR symbol:	SNX2a
Best arabidopsis TAIR defline:	sorting nexin 2A
Phytozome Locus Page

Phenotypes

Our phenotype screens did not find statistically significant results for this gene.