Gene: Cre02.g095102 (Genome version: v5.5)

Overview

Common name:	VPS5C
Defline:	Subunit of Retromer complex
Description:	Expressed Protein. Similar to VPS5/SNX1, component of Retromer Coat complex involved in endosomal to Golgi trafficking.
Synonyms:	g1875.t1,Cre11.g472500.t1.1,Cre11.g472500.t1.2,VPS5C
Chromosome:	chromosome_2

Protein Localization

We did not create a plasmid for this gene.

Protein-Protein Interactions

We did not determine any protein-protein interactions for this gene.

Mutant Strains

Insertion Junction	Mutant Strain	Orientation	Insertion Junction Feature	Confidence (%)
LMJ.RY0402.051768_1	LMJ.RY0402.051768	sense	intron	73
LMJ.RY0402.055939_1	LMJ.RY0402.055939	sense	intron	95
LMJ.RY0402.055939_2	LMJ.RY0402.055939	sense	intron	95
LMJ.RY0402.079252_1	LMJ.RY0402.079252	antisense	CDS	73
LMJ.RY0402.090960_1	LMJ.RY0402.090960	sense	intron	95
LMJ.RY0402.090960_2	LMJ.RY0402.090960	sense	intron	95
LMJ.RY0402.133051_1	LMJ.RY0402.133051	sense	3'UTR	73
LMJ.RY0402.138320_1	LMJ.RY0402.138320	sense	intron	95
LMJ.RY0402.138320_2	LMJ.RY0402.138320	sense	intron	95
LMJ.RY0402.138786_1	LMJ.RY0402.138786	sense	intron	73
LMJ.RY0402.143885_1	LMJ.RY0402.143885	antisense	3'UTR	73
LMJ.RY0402.150199_1	LMJ.RY0402.150199	sense	intron	73
LMJ.RY0402.161308_1	LMJ.RY0402.161308	sense	intron	73
LMJ.RY0402.185049_1	LMJ.RY0402.185049	sense	intron	58
LMJ.RY0402.203840_1	LMJ.RY0402.203840	antisense	CDS	95
LMJ.RY0402.203840_2	LMJ.RY0402.203840	sense	CDS	95
LMJ.RY0402.224080_1	LMJ.RY0402.224080	sense	CDS	95
LMJ.RY0402.224080_2	LMJ.RY0402.224080	sense	CDS	95
LMJ.RY0402.248116_1	LMJ.RY0402.248116	sense	3'UTR	73

Gene Annotations

PFAM:	PF00787
PANTHER:	PTHR10555:SF73 PTHR10555
KEGG_ec:
KEGG_orthology:
KOG:	KOG2273
Gene ontology terms::	GO:0005515, GO:0007154, GO:0035091
Best arabidopsis TAIR name:	AT5G58440.1
Best arabidopsis TAIR symbol:	SNX2a
Best arabidopsis TAIR defline:	sorting nexin 2A
Phytozome Locus Page

Phenotypes

Our phenotype screens did not find statistically significant results for this gene.