Insertion junction: CLIP2.071857_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.071857
Chromosome:chromosome 12
Location:1905026
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g511900 RPE1 Ribulose phosphate-3-epimerase, chloroplastic; (1 of 1) PTHR11749//PTHR11749:SF4 - RIBULOSE-5-PHOSPHATE-3-EPIMERASE // D-RIBULOSE-5-PHOSPHATE-3-EPIMERASE 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GAGGCCTCTTCCATCACGTGCTGCATCTCGACGTACGGGAACTTGGCAGC
Internal bar code:CTGGTGCGGGGGAAGGAAGGAA

Confirmation - LEAP-Seq

LEAP-Seq distance:5012
LEAP-Seq percent confirming:16.6667
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:6

Suggested primers for confirmation by PCR

Suggested primer 1:ACTAAGGCCGCGAAACTCAA
Suggested primer 2:ATGTGCGGTAATGCCAGTCA