Insertion junction: CLIP2.071944_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.071944
Chromosome:plastome
Location:172661
Confidence (%):40
Locus systematic id Locus common name Defline Feature
CreCp.g802328 psbJ,2716960,ChreCp063 (1 of 1) K02711 - photosystem II PsbJ protein (psbJ); photosystem II reaction center protein J 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TATACTCCGAAGGAGGCAGTTGCCTGCCAACTGACTCCGAAGGAGACAGT
Internal bar code:TTGCCGTGGGTTCGACTTGATA

Confirmation - LEAP-Seq

LEAP-Seq distance:115
LEAP-Seq percent confirming:96.2963
LEAP-Seq n confirming:26
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:27

Suggested primers for confirmation by PCR

Suggested primer 1:CCCCTTCGGGCAACTAAAGT
Suggested primer 2:CAGCCTCACAGTTTGCCAAG