Insertion junction: CLIP2.073685_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.073685
Chromosome:chromosome 1
Location:4021645
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g026450 SRP35,SRS1 Serine/arginine-rich pre-mRNA splicing factor; (1 of 2) K12890 - splicing factor, arginine/serine-rich 1/9 (SFRS1_9) 5'UTR
Cre01.g026500 ASP3 (1 of 2) 3.4.23.12 - Nepenthesin / Nepenthes aspartic proteinase; Pepsin-type aspartyl protease 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGTGCGACAAGTCAGAAACCGCTCGGTCCATCTTGGCCGATCTTCGCGG
Internal bar code:ACGTAGCCTATTGATCTACCGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1401
LEAP-Seq percent confirming:91.4894
LEAP-Seq n confirming:43
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:47

Suggested primers for confirmation by PCR

Suggested primer 1:CTCATGAAACGGCTCGCATG
Suggested primer 2:AAGTCCCTCTGGGTCCTCTC