Insertion junction: CLIP2.073898_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.073898
Chromosome:chromosome 4
Location:2209144
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre04.g220200 (1 of 1) PTHR16254:SF13 - K(+) EFFLUX ANTIPORTER 1, CHLOROPLASTIC-RELATED outside_mRNA

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GATGGTGGCGGGGTAAGTAGGATACGCATGACGGCAAGGGCTGGGTGGTG
Internal bar code:TAGCTCGGAGTTTTGCTAGTCA

Confirmation - LEAP-Seq

LEAP-Seq distance:1798
LEAP-Seq percent confirming:95.3846
LEAP-Seq n confirming:62
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:65

Suggested primers for confirmation by PCR

Suggested primer 1:ACGGCACATGCAAGTCTGTA
Suggested primer 2:CACGCGTGCTTAATGGGATG