Insertion junction: CLIP2.074335_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.074335
Chromosome:plastome
Location:64441
Confidence (%):80
Locus systematic id Locus common name Defline Feature
CreCp.g802291 ChreCp027,psbZ,2716976 photosystem II reaction center Z protein; (1 of 1) K02724 - photosystem II PsbZ protein (psbZ) 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTATCTAAACAGATTTAGAAAAACTTTTTTACTTTACTAGATAAGTCTAT
Internal bar code:AGTTCAACTATACGTTTACCAT

Confirmation - LEAP-Seq

LEAP-Seq distance:98
LEAP-Seq percent confirming:50.0
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:2

Suggested primers for confirmation by PCR

Suggested primer 1:CGTAAGGGGAAAGGGACGTC
Suggested primer 2:ACGTTGCACCGTGTTTGTTC