Insertion junction: CLIP2.074335_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.074335
Chromosome:plastome
Location:64542
Confidence (%):80
Locus systematic id Locus common name Defline Feature
CreCp.g802291 ChreCp027,psbZ,2716976 photosystem II reaction center Z protein; (1 of 1) K02724 - photosystem II PsbZ protein (psbZ) 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGCGAAAAACATTTAGTTAATTTTCAATAAAAACAGTTGTCGTAAGTTTA
Internal bar code:TATAGTCCATACAGGAACATAC

Confirmation - LEAP-Seq

LEAP-Seq distance:79
LEAP-Seq percent confirming:15.3846
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:11
LEAP-Seq n unique pos:13

Suggested primers for confirmation by PCR

Suggested primer 1:ACGTTGCACCGTGTTTGTTC
Suggested primer 2:CGTAAGGGGAAAGGGACGTC