Insertion junction: CLIP2.076887_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.076887
Chromosome:chromosome 6
Location:3806122
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g278174 (1 of 752) IPR027417 - P-loop containing nucleoside triphosphate hydrolase 3'UTR
Cre06.g278175 (1 of 1) K14793 - ribosomal RNA-processing protein 9 (RRP9) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTTGAAAAAACGCAACACGCACAAGCGAAGTGCATAGTGGCATAGGCATA
Internal bar code:AGCAATGGCTGGTCGCAACGCA

Confirmation - LEAP-Seq

LEAP-Seq distance:2329
LEAP-Seq percent confirming:76.3889
LEAP-Seq n confirming:55
LEAP-Seq n nonconfirming:17
LEAP-Seq n unique pos:72

Suggested primers for confirmation by PCR

Suggested primer 1:TGCAAGTATGGAGTGCTGGG
Suggested primer 2:GGCACCAATAGCAAGCAACC