Insertion junction: CLIP2.077416_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.077416
Chromosome:chromosome 3
Location:4119795
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g172600 (1 of 1) IPR000104//IPR001841//IPR011990//IPR013083 - Antifreeze protein, type I // Zinc finger, RING-type // Tetratricopeptide-like helical domain // Zinc finger, RING/FYVE/PHD-type 3'UTR
Cre03.g172650 BLD2,TUE1 (1 of 1) K10391 - tubulin epsilon (TUBE); Epsilon tubulin 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCGAACCAGATGCAGCGTCCACAAGACTTGACACACGGCTTGGCATCTCC
Internal bar code:TGCGACGGAAACGTCGTCATTG

Confirmation - LEAP-Seq

LEAP-Seq distance:1964
LEAP-Seq percent confirming:98.0392
LEAP-Seq n confirming:50
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:51

Suggested primers for confirmation by PCR

Suggested primer 1:TGGTGAGCGGTATTGCATGT
Suggested primer 2:CCTGGTTGATGGATTGCCCT