Insertion junction: CLIP2.077788_3

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.077788
Chromosome:plastome
Location:173327
Confidence (%):80
Locus systematic id Locus common name Defline Feature
CreCp.g802328 psbJ,2716960,ChreCp063 (1 of 1) K02711 - photosystem II PsbJ protein (psbJ); photosystem II reaction center protein J 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AACGATTTGTTTTTGGGACTTATTAAAAAAATAAGAGCCGTTTATAATGT
Internal bar code:GTGTGTGGAAGGTCGGGGATTT

Confirmation - LEAP-Seq

LEAP-Seq distance:156
LEAP-Seq percent confirming:64.7059
LEAP-Seq n confirming:11
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:17

Suggested primers for confirmation by PCR

Suggested primer 1:AACCTTCACGCAGATGCTCA
Suggested primer 2:GAAGGAGACAGTTGCCTGCT