Insertion junction: LMJ.RY0402.100824_1

Overview

Insertion cassette:CIB1
Side of cassette:3'
Strand:+
Strain:LMJ.RY0402.100824
Chromosome:chromosome 3
Location:7479016
Confidence (%):73
Locus systematic id Locus common name Defline Feature
Cre03.g205600 IoJAP,RSF1 (1 of 1) PTHR21043//PTHR21043:SF1 - IOJAP SUPERFAMILY ORTHOLOG // PROTEIN IOJAP, CHLOROPLASTIC; Putative chloroplast ribosome silencing factor intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACAGTTCTGACCCTCCTCCCGCCCTCGATG
Internal bar code:TATGTGCCCCGGGCAACGTCTG

Confirmation - LEAP-Seq

LEAP-Seq distance:617
LEAP-Seq percent confirming:98.8934
LEAP-Seq n confirming:2949
LEAP-Seq n nonconfirming:33
LEAP-Seq n unique pos:30

Suggested primers for confirmation by PCR

Suggested primer 1:GTGGTTGGCAGAATTGTGTG
Suggested primer 2:AAAGGCGAGAAAGTCGATCA