Insertion junction: LMJ.RY0402.112561_2

Overview

Insertion cassette:CIB1
Side of cassette:5'
Strand:-
Strain:LMJ.RY0402.112561
Chromosome:chromosome 13
Location:128205
Confidence (%):95
Locus systematic id Locus common name Defline Feature
Cre13.g562850 THF1,PSB29 Thylakoid Formation 1; (1 of 1) PTHR34793:SF1 - PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTCCGGTGTGTGTTGTCGTCTTCTCTGGAT
Internal bar code:CGTTGATTCCCGGTTTGCCCC

Confirmation - LEAP-Seq

LEAP-Seq distance:387
LEAP-Seq percent confirming:99.7004
LEAP-Seq n confirming:1331
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:3

Suggested primers for confirmation by PCR

Suggested primer 1:AACGTCTCCTCATCGTCACC
Suggested primer 2:CAAGCATGTGCGTGGTTACT