Gene: Cre01.g019250
Overview
| Common name: | SNE1,GME |
| Defline: | GDP-D-mannose 3'%252C5'-epimerase; (1 of 1) 5.1.3.18 - GDP-mannose 3,5-epimerase |
| Description: | homolog of Arabidopsis GDP-mannose-3',5'-epimerase (GME) (AT5G28840); involved in vitamin C biosynthesis |
| Synonyms: | SNE1,g451.t1,GME,Cre01.g019250.t1.1 |
| Chromosome: | chromosome 1 |
Protein Localization
A plasmid for expressing Cre01.g019250 tagged with the fluorescent protein Venus and affinity epitope 3xFLAG is available: pLM005-Cre01.g019250-Venus-3xFLAG
Imaged strain: CSI_LW02G10
Imaging conditions: Tris-Phosphate media, air, 150 uM photons/m2/s, shaking in 96-well plate; imaged after 16 hours.
Classification(s):
nucleus/nucleoplasm
If you reference these protein localization data in a manuscript, please cite: Wang et al. 2023.
 |  |  |  |
| Venus | Chlorophyll | Bright field | Merged |
Protein-Protein Interactions
| Bait ID | Bait Name | Prey ID | Prey Name | Reference |
|---|---|---|---|---|
| Cre03.g189500 | Cre01.g019250 | SNE1,GME | Wang et al. 2023 |
Mutant Strains
| Insertion Junction | Mutant Strain | Insertion Junction Feature | Confidence (%) | Genome Version |
|---|---|---|---|---|
| CLIP2.007369_1 | CLIP2.007369 | CDS | 80 | 6.1 |
| CLIP2.007369_2 | CLIP2.007369 | CDS | 80 | 6.1 |
| LMJ.RY0402.077097_1 | LMJ.RY0402.077097 | intron | 73 | 5.5 |
| LMJ.RY0402.099501_1 | LMJ.RY0402.099501 | CDS | 95 | 5.5 |
| LMJ.RY0402.099501_2 | LMJ.RY0402.099501 | 3'UTR | 95 | 5.5 |
| LMJ.RY0402.137264_1 | LMJ.RY0402.137264 | 3'UTR | 73 | 5.5 |
| LMJ.RY0402.156691_1 | LMJ.RY0402.156691 | intron | 95 | 5.5 |
| LMJ.RY0402.156691_2 | LMJ.RY0402.156691 | 3'UTR | 95 | 5.5 |
| LMJ.RY0402.159003_1 | LMJ.RY0402.159003 | 3'UTR | 73 | 5.5 |
| LMJ.RY0402.245169_1 | LMJ.RY0402.245169 | 3'UTR | 95 | 5.5 |
| LMJ.RY0402.245169_2 | LMJ.RY0402.245169 | 3'UTR | 95 | 5.5 |
Gene Annotations
| PFAM: | PF16363 |
| PANTHER: | PTHR10366 PTHR10366:SF327 |
| KEGG_ec: | EC:5.1.3.18 |
| KEGG_orthology: | K10046 |
| KOG: | KOG1429 |
| Gene ontology terms:: | GO:0003824, GO:0044237, GO:0050662 |
| Best arabidopsis TAIR name: | AT5G28840 |
| Best arabidopsis TAIR symbol: | GME |
| Best arabidopsis TAIR defline: | GDP-D-mannose 3',5'-epimerase |
| Phytozome Locus Page |
Phenotypes
Our phenotype screens did not find statistically significant results for this gene.