Gene: Cre02.g092500

Overview

Common name:	UPF1
Defline:	(1 of 1) PTHR10887//PTHR10887:SF378 - DNA2/NAM7 HELICASE FAMILY // REGULATOR OF NONSENSE TRANSCRIPTS 1 HOMOLOG; UPF1-like RNA helicase, NMD protein
Description:	putative regulator of nonsense transcripts 1 (UPF1). Part of a post-splicing multiprotein complex involved in both mRNA nuclear export and mRNA surveillance. Cytoplasmic localization. High homology to Arabidopsis thaliana accession AAL92018
Synonyms:	g1734.t1,UPF1
Chromosome:	chromosome 2

Protein Localization

We did not create a plasmid for this gene.

Protein-Protein Interactions

We did not determine any protein-protein interactions for this gene.

Mutant Strains

Insertion Junction	Mutant Strain	Insertion Junction Feature	Confidence (%)	Genome Version
CLIP2.013608_1	CLIP2.013608	CDS	80	6.1
CLIP2.013608_2	CLIP2.013608	CDS	80	6.1
CLIP2.014859_1	CLIP2.014859	intron	80	6.1
CLIP2.014859_2	CLIP2.014859	intron	80	6.1
CLIP2.025745_1	CLIP2.025745	intron	80	6.1
CLIP2.025745_2	CLIP2.025745	intron	80	6.1
CLIP2.033640_1	CLIP2.033640	3'UTR	80	6.1
CLIP2.033640_2	CLIP2.033640	3'UTR	80	6.1
CLIP2.041010_1	CLIP2.041010	intron	80	6.1
CLIP2.044173_1	CLIP2.044173	CDS	80	6.1
CLIP2.044173_2	CLIP2.044173	CDS	80	6.1
CLIP2.054591_1	CLIP2.054591	CDS	80	6.1
CLIP2.054591_2	CLIP2.054591	CDS	80	6.1
CLIP2.064436_1	CLIP2.064436	outside_mRNA	80	6.1
CLIP2.064436_2	CLIP2.064436	outside_mRNA	80	6.1
LMJ.RY0402.045355_1	LMJ.RY0402.045355	intron	95	5.5
LMJ.RY0402.045355_2	LMJ.RY0402.045355	intron	95	5.5
LMJ.RY0402.050746_1	LMJ.RY0402.050746	intron	73	5.5
LMJ.RY0402.052289_1	LMJ.RY0402.052289	intron	95	5.5
LMJ.RY0402.052289_2	LMJ.RY0402.052289	intron	95	5.5
LMJ.RY0402.067397_1	LMJ.RY0402.067397	intron	73	5.5
LMJ.RY0402.105329_1	LMJ.RY0402.105329	CDS	73	5.5
LMJ.RY0402.192738_1	LMJ.RY0402.192738	intron	58	5.5

Gene Annotations

PFAM:	PF09416, PF13086, PF13087
PANTHER:	PTHR10887 PTHR10887:SF378
KEGG_ec:	3.6.4.-
KEGG_orthology:	K14326
KOG:	KOG1802
Gene ontology terms::	GO:0000184, GO:0003677, GO:0004386, GO:0005515, GO:0005524, GO:0005737, GO:0008270
Best arabidopsis TAIR name:	AT5G47010
Best arabidopsis TAIR symbol:	ATUPF1,LBA1,UPF1
Best arabidopsis TAIR defline:	RNA helicase, putative
Phytozome Locus Page

Phenotypes

Our phenotype screens did not find statistically significant results for this gene.