Gene: Cre03.g175800
Overview
| Common name: | RIMM,RRM16 |
| Defline: | Putative chloroplast ribosomal RNA small subunit methyltransferase E; (1 of 1) 2.1.1.193 - 16S rRNA (uracil(1498)-N(3))-methyltransferase / M(3)U(1498) specific methyltransferase |
| Description: | |
| Synonyms: | g3631.t1,RIMM |
| Chromosome: | chromosome 3 |
Protein Localization
A plasmid for expressing Cre03.g175800 tagged with the fluorescent protein Venus and affinity epitope 3xFLAG is available: pLM005-Cre03.g175800-Venus-3xFLAG
Imaged strain: CSI_LW08B5
Imaging conditions: Tris-Phosphate media, air, 150 uM photons/m2/s, shaking in 96-well plate; imaged after 16 hours.
Classification(s):
chloroplast envelope/not homogeneous/punctate dots
If you reference these protein localization data in a manuscript, please cite: Wang et al. 2023.
 |  |  |  |
| Venus | Chlorophyll | Bright field | Merged |
Protein-Protein Interactions
| Bait ID | Bait Name | Prey ID | Prey Name | Reference |
|---|---|---|---|---|
| Cre03.g175800 | RIMM,RRM16 | Cre02.g083950 | PSRP3,cS23 | Wang et al. 2023 |
| Cre03.g175800 | RIMM,RRM16 | Cre02.g118950 | PRPS17 | Wang et al. 2023 |
| Cre03.g175800 | RIMM,RRM16 | Cre03.g175800 | RIMM,RRM16 | Wang et al. 2023 |
Mutant Strains
| Insertion Junction | Mutant Strain | Insertion Junction Feature | Confidence (%) | Genome Version |
|---|---|---|---|---|
| CLIP2.001491_1 | CLIP2.001491 | 3'UTR | 80 | 6.1 |
| CLIP2.001491_2 | CLIP2.001491 | 3'UTR | 80 | 6.1 |
| LMJ.RY0402.174456_1 | LMJ.RY0402.174456 | intron | 58 | 5.5 |
| LMJ.RY0402.217715_1 | LMJ.RY0402.217715 | 3'UTR | 73 | 5.5 |
Gene Annotations
| PFAM: | PF04452 |
| PANTHER: | PTHR30027 PTHR30027:SF4 |
| KEGG_ec: | EC:2.1.1.193 |
| KEGG_orthology: | |
| KOG: | |
| Gene ontology terms:: | GO:0006364, GO:0008168 |
| Best arabidopsis TAIR name: | AT1G50000 |
| Best arabidopsis TAIR symbol: | |
| Best arabidopsis TAIR defline: | methyltransferases |
| Phytozome Locus Page |
Phenotypes
Our phenotype screens did not find statistically significant results for this gene.