Gene: Cre06.g260450 (Genome version: v5.5)
Overview
| Common name: | LCI20 |
| Defline: | 2-oxoglutarate/malate translocator |
| Description: | Possibly chloroplast-located transporter, homologous to AtDCT1/2 [PMID:7873543]; Low-CO2 Inducible gene revealed by cDNA array analyses; regulated by CCM1 [PMID: 15235119]; conserved in green lineage. Acclimation to changing CO2 concentrations and light i |
| Synonyms: | g5853.t1,Cre06.g260450.t1.1 |
| Chromosome: | chromosome_6 |
Protein Localization
The plasmid for this gene is not available.
Imaged strain: CSI_FC1G02
Imaging conditions: Tris-Phosphate media, air, 150 uM photons/m2/s, shaking in 96-well plate; imaged after 48 hours.
Classification(s):
chloroplast/homogeneous/not pyrenoid depleted
If you reference these protein localization data in a manuscript, please cite: Mackinder et al. 2017.
 |
| Venus Venus+Chlorophyll |
Protein-Protein Interactions
| Bait ID | Bait Name | Prey ID | Prey Name | Reference |
|---|---|---|---|---|
| Cre06.g283750 | HST1 | Cre06.g260450 | LCI20 | |
| Cre16.g662600 | Cre06.g260450 | LCI20 | ||
| Cre06.g309000 | LCIA,NAR1.2 | Cre06.g260450 | LCI20 |
Mutant Strains
| Insertion Junction | Mutant Strain | Orientation | Insertion Junction Feature | Confidence (%) |
|---|---|---|---|---|
| LMJ.RY0402.091704_1 | LMJ.RY0402.091704 | sense | CDS | 73 |
| LMJ.RY0402.113857_1 | LMJ.RY0402.113857 | sense | 5'UTR | 58 |
| LMJ.RY0402.154417_1 | LMJ.RY0402.154417 | antisense | 3'UTR | 73 |
| LMJ.RY0402.196583_1 | LMJ.RY0402.196583 | sense | 5'UTR | 73 |
| LMJ.RY0402.199846_2 | LMJ.RY0402.199846 | antisense | 5'UTR | 73 |
| LMJ.RY0402.205944_1 | LMJ.RY0402.205944 | antisense | intron | 73 |
| LMJ.RY0402.211496_1 | LMJ.RY0402.211496 | sense | 3'UTR | 73 |
| LMJ.RY0402.232127_1 | LMJ.RY0402.232127 | sense | 5'UTR | 73 |
| LMJ.RY0402.253781_1 | LMJ.RY0402.253781 | sense | 3'UTR | 73 |
Gene Annotations
| PFAM: | PF00939 |
| PANTHER: | PTHR10283:SF13 PTHR10283 |
| KEGG_ec: | |
| KEGG_orthology: | |
| KOG: | |
| Gene ontology terms:: | GO:0005215, GO:0006814, GO:0016020, GO:0055085 |
| Best arabidopsis TAIR name: | AT5G64290.1 |
| Best arabidopsis TAIR symbol: | DCT,DIT2.1 |
| Best arabidopsis TAIR defline: | dicarboxylate transport 2.1 |
| Phytozome Locus Page |
Phenotypes
Our phenotype screens did not find statistically significant results for this gene.