Gene: Cre09.g402775

Overview

Common name:VTC4,ROC81
Defline:(1 of 1) PF02656//PF03105//PF09359 - Domain of unknown function (DUF202) (DUF202) // SPX domain (SPX) // VTC domain (VTC); Polyphosphate Polymerase activity
Description:Vacuolar tansporter Chaperone(VTC) subunit; Matsuo et al.'s (2008) roc81 (rhythm of chloroplast 81) circadian bioluminescence rhythm mutant locus maps here
Synonyms:Cre02.g140700.t1.2,g10027.t1,ROC81,Cre02.g140700.t1.1
Chromosome:chromosome 9

Protein Localization

We did not create a plasmid for this gene.

Protein-Protein Interactions

We did not determine any protein-protein interactions for this gene.

Mutant Strains

Insertion Junction Mutant Strain Insertion Junction Feature Confidence (%) Genome Version
CLIP2.033296_1 CLIP2.033296 intron 80 6.1
CLIP2.033296_2 CLIP2.033296 intron 80 6.1
CLIP2.051791_1 CLIP2.051791 intron 63 6.1
CLIP2.060998_1 CLIP2.060998 3'UTR 80 6.1
CLIP2.060998_2 CLIP2.060998 3'UTR 80 6.1
CLIP2.061687_1 CLIP2.061687 intron 63 6.1
CLIP2.061775_1 CLIP2.061775 3'UTR 80 6.1
CLIP2.061775_2 CLIP2.061775 3'UTR 80 6.1
CLIP2.069244_1 CLIP2.069244 3'UTR 80 6.1
CLIP2.069244_2 CLIP2.069244 3'UTR 80 6.1
CLIP2.070671_1 CLIP2.070671 3'UTR 80 6.1
CLIP2.070671_2 CLIP2.070671 3'UTR 80 6.1
LMJ.RY0402.050221_1 LMJ.RY0402.050221 3'UTR 58 5.5
LMJ.RY0402.063181_1 LMJ.RY0402.063181 3'UTR 95 5.5
LMJ.RY0402.063181_2 LMJ.RY0402.063181 3'UTR 95 5.5
LMJ.RY0402.086990_1 LMJ.RY0402.086990 CDS 95 5.5
LMJ.RY0402.086990_2 LMJ.RY0402.086990 CDS 95 5.5
LMJ.RY0402.118307_2 LMJ.RY0402.118307 3'UTR 58 5.5
LMJ.RY0402.133320_1 LMJ.RY0402.133320 intron 73 5.5
LMJ.RY0402.182043_2 LMJ.RY0402.182043 3'UTR 58 5.5
LMJ.RY0402.186648_1 LMJ.RY0402.186648 intron 73 5.5
LMJ.RY0402.195991_1 LMJ.RY0402.195991 3'UTR 95 5.5
LMJ.RY0402.195991_2 LMJ.RY0402.195991 intron 95 5.5
LMJ.RY0402.216999_2 LMJ.RY0402.216999 intron 73 5.5
LMJ.RY0402.221037_1 LMJ.RY0402.221037 intron 58 5.5
LMJ.RY0402.239996_1 LMJ.RY0402.239996 intron 58 5.5

Gene Annotations

PFAM:PF02656, PF03105, PF09359
PANTHER: PTHR10783 PTHR10783:SF3
KEGG_ec:
KEGG_orthology:
KOG:KOG1161
Gene ontology terms::
Best arabidopsis TAIR name:AT4G22990.2
Best arabidopsis TAIR symbol:
Best arabidopsis TAIR defline:Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-
Phytozome Locus Page

Phenotypes

Mutants in this gene exhibit a phenotype under the following conditions:

Low pH, screen 2 of 3 ( 95% confidence (FDR = 0.042))
Low Termperature, screen 1 of 1 ( 82% confidence (FDR = 0.18))
Photosynthesis or light sensitivity, screen 7 of 12 ( 76% confidence (FDR = 0.24))

Note: FDR indicates the likelihood that a particular genotype-phenotype relationship is incorrect. Not all mutants in a particular gene show the same phenotype. Please see the mutant pages for each mutant's phenotypes. Complementation is needed to definitively prove a genotype-phenotype link. These data are from a pooled phenotyping experiment.

If you reference the phenotypic data above in a manuscript, please cite: Fauser et al. 2022 Nature Genetics.