Gene: Cre12.g517400
Overview
| Common name: | RABF1,RAB5 |
| Defline: | (1 of 1) K07889 - Ras-related protein Rab-5C (RAB5C); RAB-like GTP-Binding Protein |
| Description: | Similar to the RabF/Rab5 type of small GTPase, involved in vesicle trafficking in the endosomal system; Found in the flagellar proteome [PMID: 15998802]; Similar to mammalian Rab5; Class II in PMID: 8756593; |
| Synonyms: | Cre12.g517400.t1.1,g12759.t1,RAB5,RABF1 |
| Chromosome: | chromosome 12 |
Protein Localization
A plasmid for expressing Cre12.g517400 tagged with the fluorescent protein Venus and affinity epitope 3xFLAG is available: pLM005-Cre12.g517400-Venus-3xFLAG
Imaged strain: CSI_LW12C3
Imaging conditions: Tris-Phosphate media, air, 150 uM photons/m2/s, shaking in 96-well plate; imaged after 16 hours.
Classification(s):
cytosol/cytosol (strong signal)
nucleus/nucleoplasm
If you reference these protein localization data in a manuscript, please cite: Wang et al. 2023.
 |  |  |  |
| Venus | Chlorophyll | Bright field | Merged |
Protein-Protein Interactions
We did not determine any protein-protein interactions for this gene.
Mutant Strains
| Insertion Junction | Mutant Strain | Insertion Junction Feature | Confidence (%) | Genome Version |
|---|---|---|---|---|
| CLIP2.054911_1 | CLIP2.054911 | CDS | 80 | 6.1 |
| CLIP2.054911_2 | CLIP2.054911 | CDS | 80 | 6.1 |
| LMJ.RY0402.186680_1 | LMJ.RY0402.186680 | 3'UTR | 73 | 5.5 |
| LMJ.RY0402.202444_4 | LMJ.RY0402.202444 | 3'UTR | 73 | 5.5 |
| LMJ.RY0402.237893_1 | LMJ.RY0402.237893 | 5'UTR | 95 | 5.5 |
| LMJ.RY0402.237893_2 | LMJ.RY0402.237893 | 5'UTR | 95 | 5.5 |
Gene Annotations
| PFAM: | PF00025 |
| PANTHER: | PTHR24073 PTHR24073:SF570 |
| KEGG_ec: | |
| KEGG_orthology: | K07889 |
| KOG: | KOG0092 |
| Gene ontology terms:: | GO:0003924, GO:0005525, GO:0005622, GO:0006886, GO:0006913, GO:0007165, GO:0007264, GO:0015031, GO:0016020 |
| Best arabidopsis TAIR name: | AT4G19640 |
| Best arabidopsis TAIR symbol: | ARA-7,ARA7,ATRAB-F2B,ATRAB5B,ATRABF2B,RAB-F2B,RABF2B |
| Best arabidopsis TAIR defline: | Ras-related small GTP-binding family protein |
| Phytozome Locus Page |
Phenotypes
Our phenotype screens did not find statistically significant results for this gene.