Gene: Cre16.g673001

Overview

Common name:FAD4,LCI2
Defline:(1 of 1) PTHR24067:SF41 - AKT-INTERACTING PROTEIN; Fatty acide desaturase 4
Description:Fatty acid desaturase 4 (delta3 trans); Low-CO2 inducible protein 2; Was identified in clone 215 in [PMID: 8756610] and subsequently named LCI2
Synonyms:LCI2,g16665.t1,Cre16.g672950.t2.1
Chromosome:chromosome 16

Protein Localization

We did not create a plasmid for this gene.

Protein-Protein Interactions

We did not determine any protein-protein interactions for this gene.

Mutant Strains

Insertion Junction Mutant Strain Insertion Junction Feature Confidence (%) Genome Version
CLIP2.038953_1 CLIP2.038953 intron 80 6.1
CLIP2.038953_2 CLIP2.038953 intron 80 6.1
CLIP2.057193_1 CLIP2.057193 outside_mRNA 80 6.1
CLIP2.064045_1 CLIP2.064045 outside_mRNA 80 6.1
CLIP2.064045_2 CLIP2.064045 outside_mRNA 80 6.1
CLIP2.072721_1 CLIP2.072721 outside_mRNA 80 6.1
CLIP2.074995_1 CLIP2.074995 outside_mRNA 80 6.1
CLIP2.074995_2 CLIP2.074995 outside_mRNA 80 6.1
CLIP2.078486_1 CLIP2.078486 outside_mRNA 80 6.1
CLIP2.078486_2 CLIP2.078486 outside_mRNA 80 6.1
LMJ.RY0402.050472_1 LMJ.RY0402.050472 CDS|outside_mRNA 73 5.5
LMJ.RY0402.051926_1 LMJ.RY0402.051926 CDS|intron 58 5.5
LMJ.RY0402.058147_1 LMJ.RY0402.058147 CDS|outside_mRNA 95 5.5
LMJ.RY0402.058147_2 LMJ.RY0402.058147 CDS|outside_mRNA 95 5.5
LMJ.RY0402.063053_1 LMJ.RY0402.063053 intron|outside_mRNA 95 5.5
LMJ.RY0402.063053_2 LMJ.RY0402.063053 intron|outside_mRNA 95 5.5
LMJ.RY0402.063998_1 LMJ.RY0402.063998 intron|outside_mRNA 73 5.5
LMJ.RY0402.099237_1 LMJ.RY0402.099237 intron|outside_mRNA 95 5.5
LMJ.RY0402.099237_2 LMJ.RY0402.099237 intron|outside_mRNA 95 5.5
LMJ.RY0402.132050_1 LMJ.RY0402.132050 intron|outside_mRNA 73 5.5
LMJ.RY0402.147949_1 LMJ.RY0402.147949 intron|outside_mRNA 73 5.5
LMJ.RY0402.154230_1 LMJ.RY0402.154230 intron|outside_mRNA 58 5.5
LMJ.RY0402.164422_2 LMJ.RY0402.164422 intron 73 5.5
LMJ.RY0402.172248_1 LMJ.RY0402.172248 intron|outside_mRNA 95 5.5
LMJ.RY0402.172248_2 LMJ.RY0402.172248 intron|outside_mRNA 95 5.5
LMJ.RY0402.172343_1 LMJ.RY0402.172343 intron|outside_mRNA 73 5.5
LMJ.RY0402.173645_1 LMJ.RY0402.173645 intron|outside_mRNA 73 5.5
LMJ.RY0402.212372_2 LMJ.RY0402.212372 3'UTR|outside_mRNA 73 5.5
LMJ.RY0402.227162_1 LMJ.RY0402.227162 intron|outside_mRNA 73 5.5
LMJ.RY0402.250034_1 LMJ.RY0402.250034 intron|outside_mRNA 95 5.5
LMJ.RY0402.250034_2 LMJ.RY0402.250034 intron|outside_mRNA 95 5.5

Gene Annotations

PFAM:PF10520
PANTHER: PTHR24067 PTHR24067:SF41
KEGG_ec:
KEGG_orthology:K10704
KOG:KOG3011
Gene ontology terms::
Best arabidopsis TAIR name:AT4G27030
Best arabidopsis TAIR symbol:TAPX, FAD4,FADA
Best arabidopsis TAIR defline:fatty acid desaturase A
Phytozome Locus Page

Phenotypes

Mutants in this gene exhibit a phenotype under the following conditions:

Cisplatin, screen 3 of 4 ( 73% confidence (FDR = 0.27))

Note: FDR indicates the likelihood that a particular genotype-phenotype relationship is incorrect. Not all mutants in a particular gene show the same phenotype. Please see the mutant pages for each mutant's phenotypes. Complementation is needed to definitively prove a genotype-phenotype link. These data are from a pooled phenotyping experiment.

If you reference the phenotypic data above in a manuscript, please cite: Fauser et al. 2022 Nature Genetics.