Gene: Cre16.g678050

Overview

Common name:SRS14,SRE3
Defline:Pre-mRNA splicing factor, SR-related; (1 of 1) K13171 - serine/arginine repetitive matrix protein 1 (SRRM1, SRM160)
Description:PWI domain-containing pre-mRNA splicing factor. An atypical serine/arginine-rich splicing factor lacking an RNA recognition motif (RRM), but which may help splice pre-mRNAs with weak 3' splice sites dependent on purine-rich exonic enhancer sequences (PMI
Synonyms:SRS14,g16554.t1
Chromosome:chromosome 16

Protein Localization

We did not create a plasmid for this gene.

Protein-Protein Interactions

We did not determine any protein-protein interactions for this gene.

Mutant Strains

Insertion Junction Mutant Strain Insertion Junction Feature Confidence (%) Genome Version
CLIP2.002076_1 CLIP2.002076 3'UTR 80 6.1
CLIP2.002076_2 CLIP2.002076 3'UTR 80 6.1
CLIP2.003368_1 CLIP2.003368 3'UTR 80 6.1
CLIP2.003368_2 CLIP2.003368 3'UTR 80 6.1
CLIP2.005010_1 CLIP2.005010 3'UTR 80 6.1
CLIP2.005010_2 CLIP2.005010 3'UTR 80 6.1
CLIP2.005097_1 CLIP2.005097 intron 80 6.1
CLIP2.005097_2 CLIP2.005097 intron 80 6.1
CLIP2.007765_1 CLIP2.007765 intron 80 6.1
CLIP2.007765_2 CLIP2.007765 intron 80 6.1
CLIP2.057206_2 CLIP2.057206 3'UTR 80 6.1
CLIP2.057206_3 CLIP2.057206 3'UTR 80 6.1
LMJ.RY0402.057187_1 LMJ.RY0402.057187 intron 95 5.5
LMJ.RY0402.057187_2 LMJ.RY0402.057187 intron 95 5.5
LMJ.RY0402.079967_1 LMJ.RY0402.079967 intron 95 5.5
LMJ.RY0402.079967_2 LMJ.RY0402.079967 intron 95 5.5
LMJ.RY0402.107733_1 LMJ.RY0402.107733 intron 73 5.5
LMJ.RY0402.144460_4 LMJ.RY0402.144460 intron 73 5.5
LMJ.RY0402.163342_1 LMJ.RY0402.163342 3'UTR 95 5.5
LMJ.RY0402.163342_2 LMJ.RY0402.163342 3'UTR 95 5.5
LMJ.RY0402.173809_1 LMJ.RY0402.173809 intron 73 5.5
LMJ.RY0402.183498_3 LMJ.RY0402.183498 intron 73 5.5
LMJ.RY0402.186100_1 LMJ.RY0402.186100 3'UTR 73 5.5
LMJ.RY0402.227626_1 LMJ.RY0402.227626 intron 73 5.5
LMJ.RY0402.229014_1 LMJ.RY0402.229014 3'UTR 95 5.5
LMJ.RY0402.229014_2 LMJ.RY0402.229014 3'UTR 95 5.5
LMJ.RY0402.229014_3 LMJ.RY0402.229014 3'UTR 95 5.5
LMJ.RY0402.232589_1 LMJ.RY0402.232589 intron 95 5.5
LMJ.RY0402.232589_2 LMJ.RY0402.232589 intron 95 5.5

Gene Annotations

PFAM:PF01480
PANTHER: PTHR23148
KEGG_ec:
KEGG_orthology:K13171
KOG:KOG2146
Gene ontology terms::GO:0006397
Best arabidopsis TAIR name:AT2G29210.1
Best arabidopsis TAIR symbol:
Best arabidopsis TAIR defline:splicing factor PWI domain-containing protein
Phytozome Locus Page

Phenotypes

Mutants in this gene exhibit a phenotype under the following conditions:

Carbon concentrating mechanism, screen 3 of 11 ( 77% confidence (FDR = 0.23))
Flagella, screen 2 of 6 ( 72% confidence (FDR = 0.28))

Note: FDR indicates the likelihood that a particular genotype-phenotype relationship is incorrect. Not all mutants in a particular gene show the same phenotype. Please see the mutant pages for each mutant's phenotypes. Complementation is needed to definitively prove a genotype-phenotype link. These data are from a pooled phenotyping experiment.

If you reference the phenotypic data above in a manuscript, please cite: Fauser et al. 2022 Nature Genetics.