Insertion junction: CLIP2.001695_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.001695
Chromosome:chromosome 3
Location:1452375
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g151200 CGLD16 Conserved in the Green Lineage and Diatoms; (1 of 1) PTHR36343:SF1 - EXPRESSED PROTEIN intron
Cre03.g151250 LANC1,LAN1 (1 of 1) PF05147 - Lanthionine synthetase C-like protein (LANC_like); LanC lantibiotic synthetase component C-like protein 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATAACAAAGTAATTGGCTAGCTAGCTTGGCCGGGGTGCAGGGAATGCGTA
Internal bar code:GAGTTCTGGTGTTCTAGGCGTT

Confirmation - LEAP-Seq

LEAP-Seq distance:1333
LEAP-Seq percent confirming:90.0
LEAP-Seq n confirming:18
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:20

Suggested primers for confirmation by PCR

Suggested primer 1:AACACGTGTGGCCTTATCGT
Suggested primer 2:TCGTTTCCGTGAAGGGTCTG