Insertion junction: CLIP2.041485_4

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.041485
Chromosome:plastome
Location:172124
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802328 psbJ,2716960,ChreCp063 (1 of 1) K02711 - photosystem II PsbJ protein (psbJ); photosystem II reaction center protein J 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TAGTGGCAAGTTACTGCCTATTCGAAAAAATTTGAAGCCCTTATCAAGCT
Internal bar code:CATTTGCCCGCAGCGTAGTAGG

Confirmation - LEAP-Seq

LEAP-Seq distance:135
LEAP-Seq percent confirming:75.0
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:4

Suggested primers for confirmation by PCR

Suggested primer 1:TGCTGTGCATGTGACAGAAGA
Suggested primer 2:CCCCTTCGGGCAACTAAAGT