| Common name: | |
| Defline: | (1 of 18) 3.5.1.98 - Histone deacetylase / HDAC |
| Description: | |
| Synonyms: | g253.t1 |
| Chromosome: | chromosome 1 |
We did not create a plasmid for this gene.
We did not determine any protein-protein interactions for this gene.
| Insertion Junction | Mutant Strain | Insertion Junction Feature | Confidence (%) | Genome Version |
|---|---|---|---|---|
| CLIP2.011968_1 | CLIP2.011968 | intron | 80 | 6.1 |
| CLIP2.011968_2 | CLIP2.011968 | intron | 80 | 6.1 |
| CLIP2.013737_1 | CLIP2.013737 | CDS | 80 | 6.1 |
| CLIP2.013737_2 | CLIP2.013737 | CDS | 80 | 6.1 |
| CLIP2.026401_1 | CLIP2.026401 | CDS | 80 | 6.1 |
| CLIP2.026401_2 | CLIP2.026401 | CDS | 80 | 6.1 |
| CLIP2.037980_1 | CLIP2.037980 | CDS | 80 | 6.1 |
| CLIP2.037980_2 | CLIP2.037980 | CDS | 80 | 6.1 |
| CLIP2.063589_1 | CLIP2.063589 | outside_mRNA | 80 | 6.1 |
| CLIP2.063589_2 | CLIP2.063589 | outside_mRNA | 80 | 6.1 |
| LMJ.RY0402.056017_1 | LMJ.RY0402.056017 | CDS | 73 | 5.5 |
| LMJ.RY0402.064722_1 | LMJ.RY0402.064722 | CDS | 73 | 5.5 |
| LMJ.RY0402.074351_1 | LMJ.RY0402.074351 | CDS | 58 | 5.5 |
| LMJ.RY0402.147090_1 | LMJ.RY0402.147090 | 3'UTR | 73 | 5.5 |
| LMJ.RY0402.178450_1 | LMJ.RY0402.178450 | CDS | 73 | 5.5 |
| LMJ.RY0402.203390_1 | LMJ.RY0402.203390 | 3'UTR | 73 | 5.5 |
| LMJ.RY0402.220400_1 | LMJ.RY0402.220400 | CDS | 95 | 5.5 |
| LMJ.RY0402.220400_2 | LMJ.RY0402.220400 | CDS | 95 | 5.5 |
| LMJ.RY0402.228835_1 | LMJ.RY0402.228835 | intron | 73 | 5.5 |
| PFAM: | |
| PANTHER: | |
| KEGG_ec: | |
| KEGG_orthology: | |
| KOG: | |
| Gene ontology terms:: | |
| Best arabidopsis TAIR name: | |
| Best arabidopsis TAIR symbol: | |
| Best arabidopsis TAIR defline: | |
| Phytozome Locus Page |
Mutants in this gene exhibit a phenotype under the following conditions:
| LAT027E04, screen 1 of 1 ( 98% confidence (FDR = 0.016)) |
| LAT035G03, screen 1 of 1 ( 94% confidence (FDR = 0.054)) |
| Limited growth in liquid media, screen 1 of 4 ( 88% confidence (FDR = 0.12)) |
| Limited growth in liquid media, screen 4 of 4 ( 76% confidence (FDR = 0.24)) |
| Photosynthesis or light sensitivity, screen 8 of 12 ( 78% confidence (FDR = 0.22)) |
Note: FDR indicates the likelihood that a particular genotype-phenotype relationship is incorrect. Not all mutants in a particular gene show the same phenotype. Please see the mutant pages for each mutant's phenotypes. Complementation is needed to definitively prove a genotype-phenotype link. These data are from a pooled phenotyping experiment.
If you reference the phenotypic data above in a manuscript, please cite: Fauser et al. 2022 Nature Genetics.