Gene: Cre01.g032300
Overview
| Common name: | GBP1 |
| Defline: | G-strand telomere DNA binding protein; (1 of 89) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) |
| Description: | contains two RRM domains and a region rich in Gly, Ala Arg; binds yeast telomeres and substitutes yeast homolg Rlf6, allowing recruitment of Rap1p; dimeric GBP1 has a strong preference for ssDNA, while monomer also binds cognate RNA; binding does not require formation of a G-quadruplex |
| Synonyms: | GBP1,g731.t1,Cre01.g032300.t1.1 |
| Chromosome: | chromosome 1 |
Protein Localization
A plasmid for expressing Cre01.g032300 tagged with the fluorescent protein Venus and affinity epitope 3xFLAG is available: pLM005-Cre01.g032300-Venus-3xFLAG
Imaged strain: CSI_LW11H5
Imaging conditions: Tris-Phosphate media, air, 150 uM photons/m2/s, shaking in 96-well plate; imaged after 16 hours.
Classification(s):
cytosol/cytosol (strong signal)
nucleus/nucleoplasm
nucleus/nucleolus
If you reference these protein localization data in a manuscript, please cite: Wang et al. 2023.
 |  |  |  |
| Venus | Chlorophyll | Bright field | Merged |
Protein-Protein Interactions
We did not determine any protein-protein interactions for this gene.
Mutant Strains
| Insertion Junction | Mutant Strain | Insertion Junction Feature | Confidence (%) | Genome Version |
|---|---|---|---|---|
| CLIP2.056467_1 | CLIP2.056467 | 3'UTR | 80 | 6.1 |
| CLIP2.056467_2 | CLIP2.056467 | 3'UTR | 80 | 6.1 |
| CLIP2.059247_1 | CLIP2.059247 | 3'UTR | 80 | 6.1 |
| CLIP2.059247_2 | CLIP2.059247 | 3'UTR | 80 | 6.1 |
| CLIP2.061959_1 | CLIP2.061959 | 3'UTR | 80 | 6.1 |
| CLIP2.061959_2 | CLIP2.061959 | 3'UTR | 80 | 6.1 |
| CLIP2.074167_1 | CLIP2.074167 | intron | 40 | 6.1 |
| LMJ.RY0402.098279_1 | LMJ.RY0402.098279 | CDS | 73 | 5.5 |
Gene Annotations
| PFAM: | PF00076 |
| PANTHER: | PTHR23003 |
| KEGG_ec: | |
| KEGG_orthology: | |
| KOG: | KOG0105 |
| Gene ontology terms:: | GO:0003676 |
| Best arabidopsis TAIR name: | AT2G36660.1 |
| Best arabidopsis TAIR symbol: | PAB7 |
| Best arabidopsis TAIR defline: | poly(A) binding protein 7 |
| Phytozome Locus Page |
Phenotypes
Our phenotype screens did not find statistically significant results for this gene.