Gene: Cre03.g162800
Overview
| Common name: | LCI1 |
| Defline: | Low-CO2-inducible membrane protein |
| Description: | Low-CO2-inducible gene encoding 21 kDa transmembrane protein; SOSUI prediction: signal peptide in N-terminal end and 3 transmembrane helices. Regulated by CO2 through MYB-transcription factor LCR1 [PMID: 15155888] and CCM1 [PMID: 15235119] |
| Synonyms: | Cre03.g162800.t1.1,g3337.t1 |
| Chromosome: | chromosome 3 |
Protein Localization
The plasmid for this gene is not available.
Imaged strain: CSI_FC1D05
Imaging conditions: Tris-Phosphate media, air, 150 uM photons/m2/s, shaking in 96-well plate; imaged after 48 hours.
Classification(s):
cytosol/cytosol (strong signal)
secretory pathway/plasma membrane or cell wall
If you reference these protein localization data in a manuscript, please cite: Mackinder et al. 2017.
 |
| Venus Venus+Chlorophyll |
Protein-Protein Interactions
| Bait ID | Bait Name | Prey ID | Prey Name | Reference |
|---|---|---|---|---|
| Cre02.g097800 | HLA3,MRP1 | Cre03.g162800 | LCI1 | Mackinder et al. 2017 |
| Cre03.g162800 | LCI1 | Cre02.g097800 | HLA3,MRP1 | Mackinder et al. 2017 |
| Cre03.g162800 | LCI1 | Cre03.g162800 | LCI1 | Mackinder et al. 2017 |
| Cre03.g162800 | LCI1 | Cre03.g164600 | PMA3,PMH1,ACA3 | Mackinder et al. 2017 |
| Cre03.g162800 | LCI1 | Cre10.g459200 | PMA2,ACA4 | Mackinder et al. 2017 |
| Cre03.g162800 | LCI1 | Cre15.g635067 | Mackinder et al. 2017 | |
| Cre03.g162800 | LCI1 | Cre17.g702950 | GFY5 | Mackinder et al. 2017 |
| Cre03.g162800 | LCI1 | Cre17.g734612 | MRP2 | Mackinder et al. 2017 |
Mutant Strains
| Insertion Junction | Mutant Strain | Insertion Junction Feature | Confidence (%) | Genome Version |
|---|---|---|---|---|
| CLIP2.000085_1 | CLIP2.000085 | intron | 63 | 6.1 |
| CLIP2.000235_1 | CLIP2.000235 | 5'UTR_intron | 80 | 6.1 |
| CLIP2.000313_1 | CLIP2.000313 | intron | 80 | 6.1 |
| CLIP2.000361_1 | CLIP2.000361 | CDS | 80 | 6.1 |
| CLIP2.000391_1 | CLIP2.000391 | CDS | 80 | 6.1 |
| CLIP2.000391_2 | CLIP2.000391 | CDS | 80 | 6.1 |
| LMJ.RY0402.047177_2 | LMJ.RY0402.047177 | intron | 73 | 5.5 |
| LMJ.RY0402.047177_3 | LMJ.RY0402.047177 | intron | 58 | 5.5 |
| LMJ.RY0402.048892_1 | LMJ.RY0402.048892 | 3'UTR | 73 | 5.5 |
| LMJ.RY0402.109224_1 | LMJ.RY0402.109224 | 3'UTR | 73 | 5.5 |
| LMJ.RY0402.191570_1 | LMJ.RY0402.191570 | CDS | 73 | 5.5 |
| LMJ.RY0402.200258_1 | LMJ.RY0402.200258 | intron | 73 | 5.5 |
| LMJ.RY0402.222052_1 | LMJ.RY0402.222052 | 5'UTR | 73 | 5.5 |
Gene Annotations
| PFAM: | |
| PANTHER: | |
| KEGG_ec: | |
| KEGG_orthology: | |
| KOG: | |
| Gene ontology terms:: | |
| Best arabidopsis TAIR name: | |
| Best arabidopsis TAIR symbol: | |
| Best arabidopsis TAIR defline: | |
| Phytozome Locus Page |
Phenotypes
Our phenotype screens did not find statistically significant results for this gene.