Gene: Cre03.g181250

Overview

Common name:SNE18,CGLD13
Defline:(1 of 10) PF13460 - NAD(P)H-binding (NAD_binding_10); conserved protein related to nucleoside diphosphate sugar epimerase
Description:Short chain dehydrogenase belonging to the extended family [PMID: 1223552]. Similarity to the N-terminal domain of Tic62 [PMID: 17374152 and PMID: 12426385]; related to nucleoside diphosphate sugar epimerase; putatively chloroplast targeted
Synonyms:SNE18,g3756.t1
Chromosome:chromosome 3

Protein Localization

A plasmid for expressing Cre03.g181250 tagged with the fluorescent protein Venus and affinity epitope 3xFLAG is available: pLM005-Cre03.g181250-Venus-3xFLAG

Imaged strain: CSI_LW04G4

Imaging conditions: Tris-Phosphate media, air, 150 uM photons/m2/s, shaking in 96-well plate; imaged after 16 hours.

Classification(s):

chloroplast/not homogeneous/pyrenoid depleted/enriched in thylakoid

If you reference these protein localization data in a manuscript, please cite: Wang et al. 2023.

VenusChlorophyllBright fieldMerged

Protein-Protein Interactions

We did not determine any protein-protein interactions for this gene.

Mutant Strains

Insertion Junction Mutant Strain Insertion Junction Feature Confidence (%) Genome Version
CLIP2.002778_1 CLIP2.002778 3'UTR 80 6.1
CLIP2.002778_2 CLIP2.002778 3'UTR 80 6.1
CLIP2.003316_1 CLIP2.003316 3'UTR 80 6.1
CLIP2.003316_2 CLIP2.003316 3'UTR 80 6.1
CLIP2.003339_1 CLIP2.003339 3'UTR 80 6.1
CLIP2.003339_2 CLIP2.003339 3'UTR 80 6.1
CLIP2.004127_1 CLIP2.004127 3'UTR 80 6.1
CLIP2.004127_2 CLIP2.004127 3'UTR 80 6.1
CLIP2.004390_1 CLIP2.004390 intron 80 6.1
CLIP2.004390_2 CLIP2.004390 intron 80 6.1
CLIP2.006529_1 CLIP2.006529 intron 80 6.1
CLIP2.007422_1 CLIP2.007422 3'UTR 80 6.1
CLIP2.007422_2 CLIP2.007422 3'UTR 80 6.1
LMJ.RY0402.049230_1 LMJ.RY0402.049230 3'UTR 95 5.5
LMJ.RY0402.049230_2 LMJ.RY0402.049230 3'UTR 95 5.5
LMJ.RY0402.064578_1 LMJ.RY0402.064578 intron 73 5.5
LMJ.RY0402.131626_1 LMJ.RY0402.131626 intron 73 5.5
LMJ.RY0402.166576_1 LMJ.RY0402.166576 3'UTR 95 5.5
LMJ.RY0402.166576_2 LMJ.RY0402.166576 3'UTR 95 5.5
LMJ.RY0402.180225_1 LMJ.RY0402.180225 intron 73 5.5
LMJ.RY0402.208314_1 LMJ.RY0402.208314 3'UTR 73 5.5
LMJ.RY0402.209312_1 LMJ.RY0402.209312 intron 73 5.5
LMJ.RY0402.237747_1 LMJ.RY0402.237747 intron 95 5.5
LMJ.RY0402.237747_2 LMJ.RY0402.237747 intron 95 5.5
LMJ.RY0402.245235_1 LMJ.RY0402.245235 5'UTR 95 5.5
LMJ.RY0402.245235_2 LMJ.RY0402.245235 5'UTR 95 5.5
LMJ.RY0402.245235_3 LMJ.RY0402.245235 5'UTR 95 5.5
LMJ.RY0402.248448_1 LMJ.RY0402.248448 3'UTR 95 5.5
LMJ.RY0402.248448_2 LMJ.RY0402.248448 3'UTR 95 5.5
LMJ.SG0182.016720_1 LMJ.SG0182.016720 3'UTR 75 5.3

Gene Annotations

PFAM:PF13460
PANTHER: PTHR15020 PTHR15020:SF11
KEGG_ec:
KEGG_orthology:
KOG:
Gene ontology terms::
Best arabidopsis TAIR name:AT4G31530
Best arabidopsis TAIR symbol:
Best arabidopsis TAIR defline:NAD(P)-binding Rossmann-fold superfamily protein
Phytozome Locus Page

Phenotypes

Our phenotype screens did not find statistically significant results for this gene.