Gene: Cre10.g436550
Overview
| Common name: | LCI5,EPYC1 |
| Defline: | Essential pyrenoid component 1 |
| Description: | Also known as Low-CO2-inducible protein 5 (LCI5); Low-complexity repeat protein, probably serving as a linker between RuBisCO proteins in the pyrenoid matrix; regulated by CCM1; phopshorylated under low CO2; essential for pyrenoid formation; |
| Synonyms: | g10762.t1,LCI5,Cre10.g436550.t1.1 |
| Chromosome: | chromosome 10 |
Protein Localization
The plasmid for this gene is not available.
Imaged strain: CSI_FC1B12
Imaging conditions: Tris-Phosphate media, air, 150 uM photons/m2/s, shaking in 96-well plate; imaged after 48 hours.
Classification(s):
chloroplast/pyrenoid/pyrenoid matrix enriched
If you reference these protein localization data in a manuscript, please cite: Mackinder et al. 2017.
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| Venus Venus+Chlorophyll |
Protein-Protein Interactions
| Bait ID | Bait Name | Prey ID | Prey Name | Reference |
|---|---|---|---|---|
| Cre10.g436550 | LCI5,EPYC1 | Cre01.g054850 | Mackinder et al. 2017 | |
| Cre10.g436550 | LCI5,EPYC1 | Cre02.g120150 | RBCS2 | Mackinder et al. 2017 |
| Cre10.g436550 | LCI5,EPYC1 | Cre03.g202000 | KIN4B,KIN4-2 | Mackinder et al. 2017 |
| Cre10.g436550 | LCI5,EPYC1 | Cre06.g257500 | FTT2 | Mackinder et al. 2017 |
| Cre10.g436550 | LCI5,EPYC1 | Cre08.g373450 | SBE4 | Mackinder et al. 2017 |
| Cre10.g436550 | LCI5,EPYC1 | Cre09.g394621 | Mackinder et al. 2017 | |
| Cre10.g436550 | LCI5,EPYC1 | Cre10.g436550 | LCI5,EPYC1 | Mackinder et al. 2017 |
| Cre10.g436550 | LCI5,EPYC1 | Cre12.g559250 | POC14,FTT1 | Mackinder et al. 2017 |
Mutant Strains
| Insertion Junction | Mutant Strain | Insertion Junction Feature | Confidence (%) | Genome Version |
|---|---|---|---|---|
| CLIP2.000017_1 | CLIP2.000017 | intron | 80 | 6.1 |
| CLIP2.000017_2 | CLIP2.000017 | intron | 80 | 6.1 |
| CLIP2.000332_1 | CLIP2.000332 | 5'UTR | 80 | 6.1 |
| CLIP2.000332_2 | CLIP2.000332 | 5'UTR | 80 | 6.1 |
| CLIP2.000732_1 | CLIP2.000732 | 5'UTR | 80 | 6.1 |
| LMJ.RY0402.214868_1 | LMJ.RY0402.214868 | intron | 73 | 5.5 |
Gene Annotations
| PFAM: | |
| PANTHER: | |
| KEGG_ec: | |
| KEGG_orthology: | |
| KOG: | |
| Gene ontology terms:: | |
| Best arabidopsis TAIR name: | |
| Best arabidopsis TAIR symbol: | |
| Best arabidopsis TAIR defline: | |
| Phytozome Locus Page |
Phenotypes
Our phenotype screens did not find statistically significant results for this gene.